Bioconductor Rory Stark

Showing : Rory Stark • reset

votes

replies

2.2k

views

CHIPQC Diffbind chipseq rory stark Thomas Carroll

updated 2.2 years ago by arisarkar88 ▴ 40 • written 4.5 years ago by bioinfouser2 ▴ 10

vote

replies

1.6k

views

diffbind rory stark chip seq

updated 4.0 years ago by Rory Stark ★ 5.2k • written 4.5 years ago by bioinfouser2 ▴ 10

vote

replies

1.0k

views

diffbind Rory Stark coordinate

updated 4.6 years ago by Rory Stark ★ 5.2k • written 4.7 years ago by Guandong Shang ▴ 40

votes

replies

2.2k

views

diffbind rory stark

7.3 years ago andrew.gehrke • 0

votes

replies

1.3k

views

rory stark

7.9 years ago • updated 7.4 years ago mforoo1 • 0

vote

replies

3.0k

views

diffbind chipseq atac-seq rory stark

updated 7.6 years ago by Rory Stark ★ 5.2k • written 7.6 years ago by andrew.gehrke • 0

votes

2.1k

views

Rory Stark diffbind TMM edgeR chipseq

updated 8.3 years ago by Rory Stark ★ 5.2k • written 8.5 years ago by akdess • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

Votes

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

Awards • All