Bioconductor Rory Stark

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CHIPQC Diffbind chipseq rory stark Thomas Carroll

updated 3.4 years ago by arisarkar88 ▴ 40 • written 5.7 years ago by bioinfouser2 ▴ 10

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diffbind rory stark chip seq

updated 5.1 years ago by Rory Stark ★ 5.2k • written 5.7 years ago by bioinfouser2 ▴ 10

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diffbind Rory Stark coordinate

updated 5.8 years ago by Rory Stark ★ 5.2k • written 5.8 years ago by Guandong Shang ▴ 40

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diffbind rory stark

8.4 years ago andrew.gehrke • 0

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rory stark

9.0 years ago • updated 8.6 years ago mforoo1 • 0

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diffbind chipseq atac-seq rory stark

updated 8.7 years ago by Rory Stark ★ 5.2k • written 8.7 years ago by andrew.gehrke • 0

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Rory Stark diffbind TMM edgeR chipseq

updated 9.5 years ago by Rory Stark ★ 5.2k • written 9.6 years ago by akdess • 0

7 results • Page 1 of 1

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Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ATpoint ★ 5.0k

> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…

Comment: EuroBioC2026 abstract submission is open! by TikTsokaasocissalpc • 0

Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…

Comment: DESeq2 on non-RNASeq counts data by TikTsokaasocissalpc • 0

In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…

Comment: blockwiseModule crashes in the end and doesn't generate modules by gexose2839 • 0

Sounds good. @[time][1] [1]: https://timeduration.github.io

Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0

For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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